Index

A

abc_run() (in module smfsb.inference)

abc_smc() (in module smfsb.inference) abc_smc_step() (in module smfsb.inference)

B

bd() (in module smfsb.models)

D

dimer() (in module smfsb.models)

discretise() (in module smfsb.sim)

F

file_to_spn() (in module smfsb.smfsbsbml)

G

gillespie() (smfsb.spn.Spn method)

gillespied() (smfsb.spn.Spn method)

I

id() (in module smfsb.models)

imdeath() (in module smfsb.sim)

L

lv() (in module smfsb.models)

M

metrop() (in module smfsb.inference) metropolis_hastings() (in module smfsb.inference) mm() (in module smfsb.models) mod_to_spn() (in module smfsb.smfsbsbml) model_to_spn() (in module smfsb.smfsbsbml) module smfsb smfsb.data smfsb.inference smfsb.models smfsb.sim smfsb.smfsbsbml smfsb.spatial smfsb.spn

N

normal_gibbs() (in module smfsb.inference)

P

pf_marginal_ll() (in module smfsb.inference)

R

rcfmc() (in module smfsb.sim)

rdiff() (in module smfsb.sim) rfmc() (in module smfsb.sim)

S

shorthand_to_spn() (in module smfsb.smfsbsbml) show_source() (in module smfsb.sim) sim_sample() (in module smfsb.sim) sim_time_series() (in module smfsb.sim) sim_time_series_1d() (in module smfsb.spatial) sim_time_series_2d() (in module smfsb.spatial) simple_euler() (in module smfsb.sim) sir() (in module smfsb.models) smfsb module smfsb.data module smfsb.inference module smfsb.models module smfsb.sim module

smfsb.smfsbsbml module smfsb.spatial module smfsb.spn module Spn (class in smfsb.spn) step_cle() (smfsb.spn.Spn method) step_cle_1d() (smfsb.spn.Spn method) step_cle_2d() (smfsb.spn.Spn method) step_euler() (smfsb.spn.Spn method) step_euler_1d() (smfsb.spn.Spn method) step_euler_2d() (smfsb.spn.Spn method) step_first() (smfsb.spn.Spn method) step_gillespie() (smfsb.spn.Spn method) step_gillespie_1d() (smfsb.spn.Spn method) step_gillespie_2d() (smfsb.spn.Spn method) step_poisson() (smfsb.spn.Spn method) step_sde() (in module smfsb.sim)